2011
Domanski D, Cohen Freue GV, Sojo L, Kuzyk MA, Ratkay L, Parker CE, Goldberg P, Borchers CH. The use of multiplexed MRM for the discovery of biomarkers to differentiate iron-deficiency anemia from anemia of inflammation. Journal of Proteomics. 2011 November JPROT-D-11-00502
Lin D, Hollander Z, Meredith A, Stadnick E, Sasaki M, Cohen Freue G, Qasimi P, Mui A, Ng RT, Balshaw RVA, Wilson-McManus JE, Wishart D, Hau D, Keown PA, McMaster R, McManus BM. Molecular signatures of end-stage heart failure. Journal of Cardiac Failure. 2011 October; 17(10):867-874
Domanski D, Smith DS, Miller CA, Yang Y, Jackson AM, Cohen Freue G, Hill JS, Parker CE, Borchers CH. High-flow multiplexed MRM-based analysis of proteins in human plasma without depletion or enrichment. Clin Lab Med 2011 September; 10.1016/j.cll. 2011.07.005:371-384
Balshaw RF, Cohen Freue GV. Case study 2: Proteomic biomarkers for disease status. The Canadian Journal of Statistics. 2011 June; 39(2):195-196
Carthy JM, Garmaroudi FS, Luo Z, McManus BM. Wnt3a induces myofibroblast differentiation by upregulating TGF-β signaling through SMAD2 in a β-catenin-dependent manner. PLoS ONE. 2011 May;6(5):e19809
Stanley R, McManus B, Ng R, Gombocz E, Eshleman J, Rockey C. Case Study: Applied semantic knowledgebase for detection of patients at risk of organ failure through immune rejection. 2011 March; World Wide Web Consortium (W3C), p.1-6
Gunther OP, Lin d, Balshaw RF, Ng RT, Hollander Z, Wilson-McManus J, McMaster WR, McManus B, Keown PA. Effects of sample timing and treatment on gene expression in early acute renal allograft rejection. Transplantation. 2011 Feb; 91(3):323-329
Psychogios N, Hau D, Peng J, Guo AC, Mandal R, Bouatra S, Sinelnikov I, Krishnamurthy R, Eisner R, Gautam B, Young N, Xia J, Knox C, Dong E, Huang P, Hollander Z, Pedersen T, Bamforth F, Greiner R, McManus B, Newman J, Wishart DS. The human serum metabolome. PLoS ONE. 2011 Feb; 6(2):e16957
2010
Hollander Z, Lin D, Chen V, Ng R, Wilson-McManus J, Ignaszewski A, Cohen Freue G, Balshaw R, Mui A, McMaster R, Keown PA, McManus BM for the NCE CECR PROOF Centre of Excellence. Whole Blood Biomarkers of Acute Cardiac Allograft Rejection: Double-Crossing the Biopsy. Transplantation. 2010 Dec; 90(12): 1388-93
Cohen Freue G,V Sasaki M, Meredith A, Günther OP, Bergman A, Takhar M, Mui A, Balshaw RF, Ng RT, Opushneva N, Hollander Z, Guiyun L, Borchers C, Wilson-McManus J, McManus BM, Keown PA, McMaster WR for the Genome Canada Biomarkers in Transplantation Group. Proteomic signatures in plasma during early acute renal allograft rejection. Mol Cell Proteomics 2010 Sept; 9:1954-1967
Keown P, McMaster R, McManus B. Tools to identify organ rejection and immune quiescence for biological understanding and personalized medical care. Biomarkers in Medicine 2010 Feb; 4(1):115-121
2009
Günther O, Balshaw R, Scherer A, Hollander Z, Mui A, Triche T, Cohen Freue G, Li G, Ng R, Wilson-McManus J, McMaster WR, McManus BM, Keown PA for the Biomarkers in Transplantation Team. Functional genomic analysis of peripheral blood during early acute renal allograft rejection. Transplantation 2009 Oct; 88(7):942-951
Lin D, Hollander Z, Ng RT, Imai C, Ignaszewski A, Balshaw R, Cohen Freue G, Wilson-McManus JE, Qasimi P, Mui A, Triche T, McMaster R, Keown PA, McManus BM for the Biomarkers in Transplantation Team. Whole blood genomic biomarkers of acute heart allograft rejection. The Journal of Heart and Lung Transplantation 2009 Sept; 28(9):927-935
McManus B. Trends in genomic biomarkers. Heart and Metabolism 2009 Aug; 43:19-21
Lin D, Hollander Z, Meredith A, McManus B. Searching for “Omic” biomarkers. The Canadian Journal of Cardiology 2009 Jun; 25(A):9A-14A
Chailimpamontree W, Dmitrienko S, Li G, Balshaw R, Magil A, Shapiro RJ, Landsberg D, Gill J, Keown PA for the Biomarkers in Transplantation Team. Probability, predictors, and prognosis of posttransplantation glomerulonephritis. Journal of the American Society of Nephrology 2009 Apr; 20(4):843-851
Barraclough KA, Landsberg DN, Shapiro RJ, Gill JS, Li G, Balshaw RF, Chailimpamontree W, Keown PA for the Biomarkers in Transplantation Team. A matched cohort pharmacoepidemiological analysis of steroid free immunosuppression in renal transplantation. Transplantation 2009 Mar; 87(5):672-680
Dmitrienko S, Balshaw R, Machnicki G, Shapiro RJ, Keown PA. Probabilistic modeling of cytomegalovirus infection under consensus clinical management guidelines. Transplantation 2009 Feb; 28(9):927-935
2008
Fujii H, Cuvelier G, She K, Aslanian S, Shimizu H, Kariminia A, Chen Z, McMaster R, Bergman A, Goldman F, Grupp S, Wall D, Gilman A, Schultz, K. Biomarkers in newly diagnosed pediatric extensive chronic graft-versus-host disease: a report from the children’s oncology group. Blood 2008 Mar; 111(6):3276-3285
McManus B. Searching for better biomarkers of heart risk and disease. Current Cardiovascular Risk Reports 2008 Mar; 2(2):79-81
2007
Cohen Freue G, Hollander Z, Shen E, Zamar RH, Balshaw R, Scherer A, McManus B, Keown P, McMaster R, Ng RT. MDQC: a new quality assessment method for microarrays based on quality control reports. Bioinformatics 2007 Dec; 23(23):3162-3169
Dmitrienko S, Yu A, Balshaw R, Shapiro RJ, Keown P for the Genome Canada Biomarkers in Transplantation Group. The use of consensus guidelines for management of cytomegalovirus infection in renal transplantation. Kidney International 2007 Oct; 72(8):1014–1022
Cohen-Freue G, Holzer G, Forney TR and McMaster WR. Global gene expression in leishmania. International Journal for Parasitology 2007 Aug; 37(10):1077-1086
2006
Good BM, Kawas EA, Kuo BY, Wilkinson MD. IHOPerator: user-scripting a personalized bioinformatics web, starting with the ihop website. BMC Bioinformatics 2006 Dec; 7:534
Kulkarni MM, McMaster WR, Kamysz E, Kamysz W, Engman DM, & McGwire BS. The major surface-metalloprotease of the parasitic protozoan, leishmania, protects against antimicrobial peptide-induced apoptotic killing. Molecular Microbiology 2006 Dec; 62(5):1484-97
Rahmani M, Cruz R, Granville D, McManus B. Allograft vasculopathy versus atherosclerosis. Circulation Research 2006 Oct; 99:801-815
Wen R, Wu V, Dmitrienko S, Yu A, Balshaw R, Keown PA and the Biomarkers in Transplantation Group. Biomarkers in Transplantation: Prospective, blinded measurement of predictive value for the flow cytometry crossmatch after negative antiglobulin crossmatch in kidney transplantation. Kidney International 2006 Oct; 70(8):1474-1481
Good B, Wilkinson M. The life science semantic web is full of creeps! Briefings in bioinformatics 2006 Sept; 7(3):275-286
Rahmani M, Wong BW, Ang L, Cheung CC, Carthy JM, Walinski H, McManus BM. Versican: signaling to transcriptional control pathways. Canadian Journal of Physiology and Pharmacology 2006 Jan; 84:77-92
